Changelog

Source: NEWS.md

shar 2.3.1

CRAN release: 2025-01-10

• Various
  • Update Docs

shar 2.3

CRAN release: 2024-02-14

• Improvements
  • Option to return fitted parameters during fit_point_process
  • Using NA instead of “NA”
• Various
  • Iterations and stopping criterion are vectors instead of list during reconstruct_algorithm

shar 2.2.1

CRAN release: 2024-01-09

• Improvements
  • Simplify roxygen2 docs

shar 2.2

CRAN release: 2023-12-21

• Improvements
  • Added a new function reconstruct_pattern_multi() including several internal functions and methods

shar 2.1.1

CRAN release: 2023-10-23

• Bugfixes (thanks to @baddstats)

shar 2.1

CRAN release: 2023-10-02

• Improvements
  • Remove comp_fast argument
  • Speed improvements of computation
  • General updates to code structure
• Bugfixes
  • Removed n_points and window argument from reconstruction due to methodological issues
  • Bugfix related to wrap/unwrap raster and printing

shar 2.0.4

CRAN release: 2023-08-29

• Improvements
  • Remove Sys.sleep for verbose reconstruction

shar 2.0.3

CRAN release: 2023-03-13

• Improvements
  • Allow fixed max r distance during pattern reconstruction

shar 2.0.2

CRAN release: 2022-11-16

• Various
  • Update spatstat dependency

shar 2.0.1

CRAN release: 2022-11-01

• Improvements
  • Better approach for external repo
• Various
  • Fixing typo in maintainer name

shar 2.0.0

CRAN release: 2022-09-21

• Improvements
  • Using terra instead of raster
• Bugfixes
  • Naming raster values “layer”
• New functionality
  • Adding pack_randomized() and unpack_randomized() due to terra saving behavior

shar 1.3.2

CRAN release: 2022-03-08

• Improvements
  • Improvement of classify_habitats() to be more variable
  • Adding breaks argument to results_habitat_association()
  • Adding classint_to_vector() helper function
  • Include new spatstat package structure

shar 1.3.1

CRAN release: 2022-01-04

• Bugfixes
  • Bugfix in plot.rd_pat() and plot.rd_mar()
• New functionality
  • Adding internal sample_randomized() function used during plotting

shar 1.3

CRAN release: 2021-12-06

• Improvements
  • Better documentation
  • Combine reconstruct_pattern_homo(), reconstruct_pattern_cluster(), and reconstruct_pattern_hetero() to reconstruct_pattern()
  • Replaced plot_randomized_*() function with generic plot() methods
  • Adding warnings and errors if NA values are present
    
• New functionality
  • list_to_randomized() function
  • Parallelization article
• Adding JOSS paper as reference

shar 1.2.1

CRAN release: 2021-05-04

• Improvements
  • reconstruct_pattern_homo() has arguments to specify number of points and window
  • reconstruct_pattern_marks() allows to have different number of points for pattern and marked_pattern argument

shar 1.2

CRAN release: 2021-03-15

• Improvements
  • Include new spatstat package structure
  • Use GPL3 License

shar 1.1.1

• Improvements
  • Add logo
  • Update to MIT License
  • renamed master to main branch

shar 1.1

CRAN release: 2019-11-15

• Improvements
  • Use energy_df to get energy for printing if available
  • Updated tests
  • More stable progress printing

shar 1.0.1

CRAN release: 2019-09-10

• Improvements
  • No calculation of energy for printing (too slow)

shar 1.0

CRAN release: 2019-08-08

• Improvements
  • Printing methods for most objects
  • Possibility to specify intervals of r for all reconstruction functions
• New functionality
  • plot_energy() to plot energy over iterations for reconstructed patterns
  • reconstruct_pattern_hetero() allows to reconstruct heterogeneous patterns
• Renameing/Structure
  • reconstruct_pattern() was split to three functions: reconstruct_pattern_homo(), reconstruct_pattern_hetero(), reconstruct_pattern_cluster(),
  • reconstruct_marks() is now called reconstruct_pattern_marks()

shar 0.5

CRAN release: 2019-07-09

• Improvements
  • Annealing probability can be specified for reconstruction

shar 0.4

CRAN release: 2019-05-27

• Improvements
  • Easier user experience because classes are used to specify provided input
  • results_habitat_associations() checks if extent of inputs is identical
  • reconstruct_marks() and calculate_energy() use now weights for the summary functions
• Bugfixes
  • Bug in calculate_energy() for reconstructed marks

shar 0.3.1

CRAN release: 2019-04-23

• Improvements
  • Better structure of vignettes
  • Adding CONTRIBUTING.md
  • Trying to fix some failing tests for older R versions
• New functionality
• Allowing to translate raster only in n steps

shar 0.3

CRAN release: 2019-03-25

• Improvements
  • plot_randomized_pattern() now uses envelopes to plot randomized summary functions
  • plot_randomized_pattern() includes a quantum bar
  • plot_randomized_pattern() now can return plots after each other (Press )
  • calculate_engery() can also calculate the energy for marked reconstructions
  • Improved warning messages
• Bugfixes
  • Explicitly C++11 compiler
• New functionality
  • plot_randomized_pattern() to plot randomized rasters

shar 0.2.1

• Improvements
  • Minor speed improvement for reconstruct_pattern(), reconstruct_marks() and calculate_energy()
    • The starting pattern is now identical for all n_random and only the relocation process differs between randomization
    • All summary functions are only calculated for 250 steps from 0 to rmax
• Bugfixes
• New functionality
  • rcpp_sample() as a faster Rcpp implementation of sample()

shar 0.2

CRAN release: 2019-02-06

• Improvements
  • Replaced cat() with message() for all printing to console
  • All defaults set to n_random = 1
  • comp_fast argument equals TRUE if number of points exceed threshold
  • reconstruct_pattern() stops if energy did not decrease for n iterations
  • reconstruct_marks() stops if energy did not decrease for n iterations
  • plot_randomized_pattern() can also plot point patterns
• Bugfixes
  • Bug in fit_point_process() that more points as present could be removed from simulated pattern
  • Bug in reconstruct_pattern() that more points as present could be removed from simulated pattern

shar 0.1

CRAN release: 2019-01-27

• First submission to CRAN