Function reference • spectre

Core

generate_commonness_matrix_from_gdm(): generate_commonness_matrix_from_gdm

run_optimization_min_conf(): run_optimization_min_conf

calc_commonness_error(): calc_commonness_error

Utility

plot_error(): plot_error

plot_commonness(): plot_commonness

print(<optim_sol>): print.optim_sol

Datasets

alpha_list: Matrix of predicted alpha diversity in each cell.

estimated_gamma: Total (estimated) species in the system.

target_matrix: Pairwise matrix of species in common.

minimal_example_data: List with example data created using the gdm package